Many reputed journals have published articles referring to analysis done with the help of products based on Strand's award winning technology platform avadisTM . An indicative list follows. Also listed below are some case studies explaining nuances of Strand's algorithms.
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avadisTM in publication - Low degree metabolites explain essential reactions and
enhance modularity in biological networks |
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by Samal et al., BMC Bioinformatics. Abstract available at
publisher website.
Contact us at sales@strandls.com for a full-text PDF version. |
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avadisTM in publication - Gene expression profiles during human CD4+ T cell differentiation |
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by Myeong Sup Lee, Kristina Hanspers, Christopher S. Barker, Abner P. Korn and Joseph M. McCune, International Immunology. Abstract available at
publisher website.
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avadisTM in publication - Transcription profile during maternal to zygotic transition in the mouse embryo |
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by Xing-Yu Li, Xiang-Shun Cui and Nam-Hyung Kim, Reproduction, Fertility & Development. Abstract available at
publisher website.
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avadisTM in publication - Evaluation of MetriGenix custom 4D™ arrays applied for detection of breast cancer subtypes |
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by Aslaug Aamodt Muggerud, Hilde Johnsen, Debra A Barnes, Adam Steel, Per Eystein Lønning, Bjørn Naume, Therese Sørlie and Anne-Lise Børresen-Dale, BioMed Central. Abstract available at
publisher website.
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avadisTM in publication - in vitro Transcription Amplification and Labeling Methods Contribute to the Variability of Gene Expression Profiling with DNA Microarrays |
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by Changqing Ma, Maureen Lyons-Weiler, Wenjing Liang, William LaFramboise, John R. Gilbertson, Michael J. Becich and
Federico A. Monzon, Journal of Molecular Diagnostics. Abstract available at
publisher website.
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avadisTM in publication - Specific epitopes of the structural and hypothetical proteins elicit variable humoral responses in SARS patients |
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by S C S Chow, C Y S Ho, T T Y Tam, C Wu, T Cheung, P K S Chan, M H L Ng, P K Hui, H K Ng, D M Y Au and A W I Lo, Journal of Clinical Pathology. Abstract available at
publisher website.
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avadisTM in publication - Oligonucleotide-based functional gene arrays for analysis of microbial communities in the environment |
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by Sonia M. Tiquia, Song C. Chong, Matthew W. Fields and Jizhong Zhou, Molecular Microbial Ecology Manual. Article available at
publisher website.
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avadisTM in publication - Implication of SSAT by Gene Expression and Genetic Variation in Suicide and Major Depression |
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by Adolfo Sequeira, Fuad G. Gwadry, Jarlath M. H. ffrench-Mullen, Lilian Canetti; Yves Gingras, Robert A. Casero, Jr, Guy Rouleau, Chawki Benkelfat, Gustavo Turecki, Archives of General Psychiatry. Abstract available at
publisher website.
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avadisTM in publication - Comparative Analysis of Yeast Expression Profiles Using an Annotated Microarray Database |
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by Kelley Larson, Jennifer Marcello, Nitin Sawhney, Shai Sachs. Article available at
publisher website.
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avadisTM in publication - Differentiation of Escherichia coli Pathotypes by Oligonucleotide Spotted Array |
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by Raghavan U. M. Palaniappan, Yu Zhang, David Chiu, Alfonso Torres, Chobi DebRoy, Thomas S. Whittam and Yung-Fu Chang, Journal of Clinical Microbiology. Abstract available at
publisher website.
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avadisTM in publication - Microarray Expression Analysis of Systemic Lupus Erythematosis and Anti-neutrophilic Autoantibody (ANCA) Vasculitis patient Leukocytes Reveals Disease Specific Gene Expression Signatures |
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by A. David, D.A. Barnes, M.A. Dooley, P. Sullivan, B. Jonas, R. Thomas, H. Chen, C. Candiani, J.C. Jennette, R.J. Falk, Kidney & Blood Pressure Research, 12th International Vasculitis and ANCA Workshop. Abstract available at
publisher website.
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avadisTM in publication - Molecular Characterization of Suicide by Microarray Analysis |
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by Gwadry Fuad et al., Americal Journal of Medicinal Genetics. Abstract available at
publisher website. Contact us at sales@strandls.com for a full-text PDF version.
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avadisTM in publication - 252 Differences in Gene Expression Profiles in Mouse Fertilized Blastocysts and Diploid Blastocyst Stage Parthenotes |
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N.H. Kim, S.K. Cho, X.Y. Li, X.H. Shen and X.S. Cui, Reproduction, Fertility & Developemnt. Abstract available at
publisher website.
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avadisTM in publication - Sequential gene expression changes in cancer cell lines after treatment with the demethylation agent 5-Aza-2-deoxycytidine |
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Makoto Arai, Osamu Yokosuka, Yuichi Hirasawa, Kenichi Fukai, Tetsuhiro Chiba, Fumio Imazeki, Tatsuo Kanda, Mari Yatomi, Yuichi Takiguchi, Naohiko Seki, Hiromitsu Saisho, Takenori Ochiai, Cancer. Abstract available at
publisher website.
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Case Study -
Affymetrix Time Course Data: Myeloid Cell Differentiation |
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The goal of this study is to identify
the cascade of genes expression changes
which occur in the MPRO mouse cell line. |
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Case Study - Cluster Analysis of Two-Color Data: Human Breast Tumor Diversity |
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65 surgical specimens of Human breast tumors from 42 different individuals were
studied using c-DNA microarrays representing about 9000 human
genes. |
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Case Study - Modeling with Neural Networks: Predicting Mechanism of Drug Action |
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This study is to
predict a drug's mechanism of action from its pattern of activity
against a panel of 60 malignant cell lines in the National Cancer Institute's drug screening program. |
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Case Study - Enterprise-scale Data Visualization |
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This case study describes an instance of
enterprise-scale data access and visualization using avadis, as deployed in a prominent antibody research company in USA |
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Case Study - Clustering |
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A Comparative analysis of clustering results on the Diauxic dataset |
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Case Study - Classification |
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Analysis of classification and prediction algorithms in avadis 2.0 on the Lymphoma dataset |
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White Paper - Controlling False Positives in Affymetrix GeneChip data |
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A Comparative analysis of algorithms in avadis and other tools, using Affymetrix Latin Square data |
